STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0214TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: mpt:Mpe_A3379 putative phosphatase protein. (199 aa)    
Predicted Functional Partners:
Lcho_1638
TIGRFAM: phosphoheptose isomerase; KEGG: mpt:Mpe_A3765 phosphoheptose isomerase.
  
 0.992
Lcho_0212
PFAM: protein of unknown function DUF45; KEGG: mpt:Mpe_A3377 hypothetical protein.
   
   0.823
Lcho_0213
PFAM: phospholipid/glycerol acyltransferase; KEGG: mpt:Mpe_A3378 putative acyltransferase.
  
  
 0.815
glyS
glycyl-tRNA synthetase, beta subunit; KEGG: mpt:Mpe_A3380 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, beta subunit.
  
    0.804
glyQ
KEGG: aav:Aave_4178 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit.
       0.800
Lcho_2712
PFAM: ATP dependent DNA ligase; KEGG: mpt:Mpe_A1359 DNA ligase.
 
 
 0.779
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A0832 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
 0.737
Lcho_0968
TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: dar:Daro_3928 lipopolysaccharide heptosyltransferase I.
 
   
 0.734
hisH
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
  
  
 0.730
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
  
 0.724
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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