STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0285KEGG: eba:ebB56 hypothetical protein. (131 aa)    
Predicted Functional Partners:
Lcho_0284
KEGG: eba:ebB57 hypothetical protein.
 
     0.929
Lcho_1421
Putative phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; KEGG: mpt:Mpe_A3811 hypothetical protein.
 
     0.629
Lcho_0286
PFAM: conserved hypothetical protein; KEGG: rfr:Rfer_3194 uncharacterized protein UPF0065.
       0.584
Lcho_0287
PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_2665 endoribonuclease L-PSP.
       0.514
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mpt:Mpe_A0600 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.514
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.