STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0293DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: bpt:Bpet4818 lipopolysaccharides biosynthesis aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (382 aa)    
Predicted Functional Partners:
Lcho_0290
Acetyltransferase; KEGG: reh:H16_B0032 acetyltransferase.
  
 0.982
Lcho_0289
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: bbr:BB0155 probable oxidoreductase.
 
 
 0.980
Lcho_0294
PFAM: polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein.
 
  
 0.869
Lcho_1397
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: nha:Nham_3041 oxidoreductase-like.
  
 0.830
Lcho_0297
PFAM: glycosyl transferase group 1; KEGG: plu:plu4805 WblI protein.
 
  
 0.798
Lcho_2319
Undecaprenyl-phosphate glucose phosphotransferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.782
Lcho_2715
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative.
 
  
 0.782
Lcho_0295
Acetyltransferase; KEGG: bpt:Bpet1526 acetyltransferase.
  
  
 0.780
Lcho_0301
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: mpt:Mpe_A0609 polysaccharide biosynthesis protein.
 
  
 0.753
Lcho_0291
KEGG: cau:Caur_3354 hypothetical protein.
       0.732
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.