STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0296PFAM: glycosyl transferase group 1; KEGG: bpt:Bpet1525 glycosyltransferase. (365 aa)    
Predicted Functional Partners:
Lcho_0298
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0605 hypothetical protein.
 
     0.942
Lcho_0295
Acetyltransferase; KEGG: bpt:Bpet1526 acetyltransferase.
 
  
 0.938
Lcho_0297
PFAM: glycosyl transferase group 1; KEGG: plu:plu4805 WblI protein.
 
     0.920
Lcho_0294
PFAM: polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein.
 
  
 0.917
Lcho_0291
KEGG: cau:Caur_3354 hypothetical protein.
 
     0.798
Lcho_0489
PFAM: O-antigen polymerase; KEGG: mpt:Mpe_A0063 O-antigen polymerase.
 
  
 0.724
Lcho_0293
DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: bpt:Bpet4818 lipopolysaccharides biosynthesis aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.680
Lcho_0265
KEGG: mpt:Mpe_A0595 hypothetical protein.
  
   
 0.640
Lcho_0300
PFAM: sugar transferase; KEGG: mpt:Mpe_A0608 putative sugar transferase.
 
  
 0.640
Lcho_1007
KEGG: cph:Cpha266_1838 hypothetical protein.
 
  
 0.639
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.