STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0354PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport. (109 aa)    
Predicted Functional Partners:
Lcho_0353
PFAM: AzlC family protein; KEGG: mpt:Mpe_A0287 hypothetical protein.
 
  
 0.948
Lcho_0679
KEGG: mpt:Mpe_A1102 hypothetical protein.
  
     0.765
Lcho_3533
KEGG: mpt:Mpe_A0190 putative ATP synthase protein I AtpI.
  
     0.755
Lcho_3914
KEGG: mpt:Mpe_A0205 hypothetical protein.
  
     0.751
Lcho_4387
Hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.747
Lcho_1645
KEGG: mpt:Mpe_A2129 putative two-component transmembrane sensor histidine kinase transcription regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.728
Lcho_0554
PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A3158 hypothetical protein.
 
     0.722
Lcho_4009
KEGG: vei:Veis_1320 hypothetical protein.
  
     0.709
Lcho_3579
KEGG: mpt:Mpe_A2078 hypothetical protein.
  
     0.695
Lcho_0977
KEGG: mpt:Mpe_A2249 hypothetical protein.
  
     0.688
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.