STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0358PFAM: protein of unknown function DUF86; KEGG: afw:Anae109_0233 protein of unknown function DUF86. (112 aa)    
Predicted Functional Partners:
Lcho_0357
PFAM: DNA polymerase beta domain protein region; KEGG: rrs:RoseRS_2453 DNA polymerase, beta domain protein region.
 
  
 0.962
Lcho_0356
KEGG: pna:Pnap_4909 protein of unknown function DUF88.
       0.524
Lcho_4191
PFAM: protein of unknown function DUF433; KEGG: ava:Ava_1741 protein of unknown function DUF433.
  
     0.505
Lcho_2333
PFAM: protein of unknown function DUF86; KEGG: cph:Cpha266_0768 protein of unknown function DUF86.
  
  
  0.500
Lcho_1566
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.473
Lcho_1275
PFAM: protein of unknown function DUF86; KEGG: pna:Pnap_0134 protein of unknown function DUF86.
  
  
  0.453
Lcho_0359
PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding; KEGG: aav:Aave_1095 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), phosphate acetyltransferase.
       0.442
Lcho_2332
KEGG: cph:Cpha266_0766 DNA polymerase, beta domain protein region.
 
  
 0.426
Lcho_2331
KEGG: syn:ssl2065 hypothetical protein.
 
     0.415
Lcho_1565
PFAM: PilT protein domain protein; KEGG: gvi:gll3555 hypothetical protein.
  
     0.414
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.