STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0407TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit. (419 aa)    
Predicted Functional Partners:
Lcho_0405
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit.
  
 0.899
Lcho_3219
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sit:TM1040_3869 tripartite ATP-independent periplasmic transporter, DctQ component.
 
 
 0.857
Lcho_0406
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dac:Daci_0730 tripartite ATP-independent periplasmic transporter DctQ component.
 
 
 0.850
Lcho_2458
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_0755 TRAP dicarboxylate transporter, DctP subunit.
  
 0.796
Lcho_0326
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_0755 TRAP dicarboxylate transporter, DctP subunit.
  
 0.795
Lcho_0416
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit.
  
 0.795
Lcho_1114
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pmy:Pmen_3301 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.795
Lcho_1438
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit.
  
 0.795
Lcho_3220
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VVA1590 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
 0.795
Lcho_4271
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit.
  
 0.795
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.