STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0418PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: pna:Pnap_1560 4-hydroxyphenylpyruvate dioxygenase. (635 aa)    
Predicted Functional Partners:
Lcho_4302
KEGG: pol:Bpro_2997 homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase.
 
 0.979
Lcho_0924
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A3682 aromatic amino acid aminotransferase.
  
 
 0.930
Lcho_1051
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: pna:Pnap_1562 aspartate transaminase.
  
 
 0.930
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A0832 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.926
Lcho_0948
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A3520 D-amino-acid dehydrogenase.
   
 
 0.909
Lcho_2380
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_4507 D-amino-acid dehydrogenase.
   
 
 0.909
Lcho_2852
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1981 D-amino-acid dehydrogenase.
   
 
 0.909
Lcho_4238
PFAM: aminotransferase class IV; KEGG: mpt:Mpe_A0312 putative class IV aminotransferase.
  
 
 0.904
Lcho_0419
PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: pna:Pnap_1561 shikimate dehydrogenase.
 
  
 0.815
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
     
 0.759
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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