STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0435PFAM: transferase hexapeptide repeat containing protein; KEGG: rme:Rmet_1059 transferase hexapeptide repeat. (174 aa)    
Predicted Functional Partners:
Lcho_0436
PFAM: conserved hypothetical protein; KEGG: dac:Daci_3139 hypothetical protein.
       0.773
Lcho_4203
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 
 0.665
Lcho_3767
PFAM: ribulose bisphosphate carboxylase large chain; KEGG: pna:Pnap_1978 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
    
 
 0.660
Lcho_0433
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pna:Pnap_1119 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.641
Lcho_0432
Fumarylacetoacetase; KEGG: pna:Pnap_1118 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
       0.628
Lcho_0434
KEGG: pna:Pnap_1120 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.628
Lcho_0437
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_1122 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
     
 0.621
Lcho_0438
PFAM: pyruvate carboxyltransferase; KEGG: pna:Pnap_1123 pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.474
Lcho_3958
KEGG: mpt:Mpe_A0709 putative dihydroorotase-like protein.
  
  
 0.414
Lcho_4160
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psa:PST_3589 glyoxylase I family protein.
 
    0.404
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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