STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0440Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sme:SMb20586 putative transcriptional regulator, IclR family protein. (267 aa)    
Predicted Functional Partners:
Lcho_0441
KEGG: rpe:RPE_3808 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
 
   
 0.788
Lcho_2886
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mpt:Mpe_A2099 putative transcription regulator protein.
  
     0.765
Lcho_2369
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: azc:AZC_4534 transcriptional regulator.
  
     0.763
Lcho_4298
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: dac:Daci_0581 transcriptional regulator, IclR family.
  
     0.755
Lcho_0816
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pde:Pden_0188 regulatory proteins, IclR.
  
     0.723
Lcho_0439
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6279 transcriptional regulator, LysR family.
 
    0.565
Lcho_0442
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bpt:Bpet3318 putative sulfate permease.
       0.543
Lcho_0120
PFAM: intradiol ring-cleavage dioxygenase; KEGG: pol:Bpro_3458 intradiol ring-cleavage dioxygenase.
 
  
 0.449
Lcho_4188
PFAM: Carboxymuconolactone decarboxylase; KEGG: bmu:Bmul_5046 carboxymuconolactone decarboxylase.
 
   
 0.431
Lcho_0443
KEGG: mpt:Mpe_A2032 hypothetical protein.
       0.418
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.