STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0446PFAM: multi antimicrobial extrusion protein MatE; KEGG: scl:sce1470 MATE efflux family protein. (455 aa)    
Predicted Functional Partners:
Lcho_0221
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: reh:H16_A3146 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.746
Lcho_0445
PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4514 pyruvate carboxyltransferase.
       0.723
Lcho_2548
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: mpt:Mpe_A1288 putative terpenoid synthase-related protein.
   
 
 0.657
Lcho_2549
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: mpt:Mpe_A1287 putative phytoene synthase.
   
 
 0.657
Lcho_0964
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.643
Lcho_0181
Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: mpt:Mpe_A3810 sodium/hydrogen exchanger family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.522
Lcho_1296
TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_1237 glutathione-regulated potassium-efflux system protein KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.522
pheT
phenylalanyl-tRNA synthetase, beta subunit; KEGG: mpt:Mpe_A1883 phenylalanine--tRNA ligase; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
     
 0.506
Lcho_4267
PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A2068 hypothetical protein.
     
 0.463
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.449
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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