STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0458PFAM: YceI family protein; KEGG: aav:Aave_3506 YceI family protein; Belongs to the UPF0312 family. (190 aa)    
Predicted Functional Partners:
Lcho_0459
PFAM: cytochrome B561; KEGG: mpt:Mpe_A3506 putative cytochrome b-561 membrane protein.
  
 0.978
Lcho_0457
PFAM: YceI family protein; KEGG: pna:Pnap_3578 YceI family protein; Belongs to the UPF0312 family.
 
     0.920
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.457
Lcho_2768
PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_0378 ferritin, Dps family protein; Belongs to the Dps family.
 
    0.454
Lcho_0460
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: mpt:Mpe_A0238 hypothetical protein.
       0.412
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.