STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0583PFAM: beta-lactamase domain protein; KEGG: ajs:Ajs_0515 beta-lactamase domain protein. (307 aa)    
Predicted Functional Partners:
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.768
Lcho_0009
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eba:ebA2889 hypothetical protein.
  
    0.507
Lcho_2060
KEGG: mpt:Mpe_A1619 putative transmembrane protein.
  
     0.456
Lcho_4244
KEGG: pna:Pnap_0435 putative lipase transmembrane protein.
 
    0.451
Lcho_4234
PFAM: VanZ family protein; KEGG: mpt:Mpe_A0308 hypothetical protein.
  
     0.442
Lcho_3582
KEGG: mpt:Mpe_A2075 conserved hypothetical signal peptide protein.
  
     0.436
Lcho_0105
KEGG: ajs:Ajs_0499 hypothetical protein.
 
     0.435
Lcho_3579
KEGG: mpt:Mpe_A2078 hypothetical protein.
  
     0.427
Lcho_1985
PFAM: regulatory protein LuxR; KEGG: rfr:Rfer_2636 transcriptional regulator, LuxR family.
  
     0.421
Lcho_4053
PFAM: beta-lactamase domain protein; KEGG: aav:Aave_0282 beta-lactamase domain protein.
  
     0.415
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.