STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0656TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; KEGG: noc:Noc_0133 conserved hypothetical ATP binding protein. (178 aa)    
Predicted Functional Partners:
Lcho_0658
PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7.
 
 
 0.960
Lcho_2108
PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7.
 
 
 0.931
Lcho_0655
KEGG: lma:LmjF35.0290 hypothetical protein, conserved.
 
     0.914
Lcho_0657
KEGG: noc:Noc_0134 hypothetical protein.
 
     0.905
Lcho_0660
KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component.
 
     0.850
Lcho_2013
KEGG: mpt:Mpe_A1550 hypothetical protein.
 
 
 0.849
Lcho_0654
Hypothetical protein.
 
     0.822
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
   
 0.805
Lcho_2109
KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component.
 
     0.767
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]
   
 
 0.703
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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