STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (100 aa)    
Predicted Functional Partners:
rpmB
PFAM: ribosomal protein L28; KEGG: mpt:Mpe_A1117 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.991
rpsU
PFAM: ribosomal protein S21; KEGG: ajs:Ajs_2858 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 0.991
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.991
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.991
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: mpt:Mpe_A0634 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.990
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.990
Lcho_2807
PFAM: ribosomal protein L31; KEGG: mpt:Mpe_A1281 putative ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.990
rpsP
PFAM: ribosomal protein S16; KEGG: mpt:Mpe_A1104 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.989
rpmA
PFAM: ribosomal protein L27; KEGG: mpt:Mpe_A0512 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.989
rpmH
PFAM: ribosomal protein L34; KEGG: pna:Pnap_4116 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
 
 0.988
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.