STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0679KEGG: mpt:Mpe_A1102 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Lcho_0680
PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A1103 putative phosphinothricin acetyltransferase.
       0.803
Lcho_3914
KEGG: mpt:Mpe_A0205 hypothetical protein.
  
     0.770
Lcho_0554
PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A3158 hypothetical protein.
 
     0.767
Lcho_2895
KEGG: ajs:Ajs_1767 putative transmembrane protein.
  
     0.766
Lcho_0354
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
  
     0.765
Lcho_4387
Hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.760
Lcho_3533
KEGG: mpt:Mpe_A0190 putative ATP synthase protein I AtpI.
  
     0.758
Lcho_3266
KEGG: mpt:Mpe_A3630 hypothetical protein.
  
     0.748
Lcho_3424
PFAM: General secretion pathway L; KEGG: mpt:Mpe_A3133 general secretion pathway protein L.
  
     0.743
Lcho_3579
KEGG: mpt:Mpe_A2078 hypothetical protein.
  
     0.742
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.