STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0710KEGG: bxe:Bxe_C0660 putative hydrolase. (93 aa)    
Predicted Functional Partners:
Lcho_0711
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3546 uncharacterized protein UPF0065.
       0.776
Lcho_0712
PFAM: conserved hypothetical protein; KEGG: dac:Daci_4275 hypothetical protein.
       0.776
Lcho_0713
KEGG: dac:Daci_5627 porin, gram-negative type.
 
     0.771
Lcho_0714
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain protein.
 
     0.753
Lcho_0709
Fumarylacetoacetase; KEGG: dac:Daci_2036 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
       0.693
Lcho_3635
PFAM: amidohydrolase 2; KEGG: pna:Pnap_2029 amidohydrolase 2.
  
     0.559
Lcho_0718
PFAM: Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase.
 
   
 0.530
Lcho_1117
TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_3419 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.511
Lcho_0716
KEGG: acr:Acry_2893 hypothetical protein.
 
     0.476
Lcho_3207
PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0434 major facilitator superfamily MFS_1.
  
  
 0.460
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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