STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0711PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3546 uncharacterized protein UPF0065. (277 aa)    
Predicted Functional Partners:
Lcho_2304
PFAM: protein of unknown function DUF112 transmembrane; KEGG: mpt:Mpe_A3056 putative transmembrane protein.
  
 0.861
Lcho_2567
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_3009 protein of unknown function DUF112, transmembrane.
  
 0.861
Lcho_0712
PFAM: conserved hypothetical protein; KEGG: dac:Daci_4275 hypothetical protein.
 
    
0.799
Lcho_0710
KEGG: bxe:Bxe_C0660 putative hydrolase.
       0.776
Lcho_2305
PFAM: protein of unknown function DUF1468; KEGG: mpt:Mpe_A3057 hypothetical protein.
 
  
 0.742
Lcho_0713
KEGG: dac:Daci_5627 porin, gram-negative type.
       0.741
Lcho_0709
Fumarylacetoacetase; KEGG: dac:Daci_2036 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
       0.686
Lcho_0715
PFAM: conserved hypothetical protein; KEGG: reh:H16_B0346 probable extra-cytoplasmic solute receptor.
 
    
0.523
Lcho_0714
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain protein.
       0.466
Lcho_2568
KEGG: pna:Pnap_1235 hypothetical protein.
  
  
 0.412
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.