STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0733Response regulator receiver protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; response regulator receiver; KEGG: reu:Reut_B5042 excisionase/Xis, DNA-binding. (215 aa)    
Predicted Functional Partners:
Lcho_0751
KEGG: mpt:Mpe_A1948 hypothetical protein.
  
     0.583
Lcho_3700
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppd:Ppro_0900 endonuclease/exonuclease/phosphatase.
  
     0.554
Lcho_3848
PFAM: protein of unknown function DUF88; KEGG: ajs:Ajs_1706 protein of unknown function DUF88.
  
     0.533
Lcho_0298
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0605 hypothetical protein.
  
     0.510
Lcho_0734
PFAM: response regulator receiver; KEGG: dac:Daci_0738 response regulator receiver protein.
       0.504
Lcho_0655
KEGG: lma:LmjF35.0290 hypothetical protein, conserved.
  
     0.502
Lcho_2967
KEGG: mpt:Mpe_A2083 hypothetical protein.
  
     0.487
Lcho_1754
KEGG: mag:amb3790 large exoprotein involved in heme utilization or adhesion.
  
     0.478
Lcho_2646
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo1830 putative TonB-denpendent receptor.
  
     0.465
Lcho_3336
KEGG: dar:Daro_2990 hypothetical protein.
  
     0.464
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.