STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0768PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: eba:ebA495 phage-related integrase; Belongs to the 'phage' integrase family. (337 aa)    
Predicted Functional Partners:
Lcho_0769
PFAM: integrase family protein; KEGG: eba:ebA497 phage-related integrase.
 
     0.946
Lcho_0770
PFAM: integrase family protein; KEGG: eba:ebA499 phage-related integrase; Belongs to the 'phage' integrase family.
 
     0.946
Lcho_0776
PFAM: integrase family protein; KEGG: eba:p2A219 putative integrase.
  
     0.774
Lcho_0777
PFAM: integrase family protein; KEGG: eba:ebA499 phage-related integrase.
  
     0.774
Lcho_2929
TIGRFAM: general secretion pathway protein H; KEGG: mpt:Mpe_A2940 fimbrial biogenesis protein.
  
     0.458
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
0.453
Lcho_3816
KEGG: mpt:Mpe_A3184 putative phosphoribosyl transferase.
   
    0.420
Lcho_0962
PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mpt:Mpe_A2242 prephenate dehydrogenase.
  
    0.411
Lcho_0756
PFAM: cell divisionFtsK/SpoIIIE; KEGG: mpt:Mpe_A1120 putative cell division FtsK transmembrane protein.
  
   
 0.410
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.