node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lcho_0002 | Lcho_0785 | Lcho_0002 | Lcho_0785 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | 0.717 |
Lcho_0784 | Lcho_0785 | Lcho_0784 | Lcho_0785 | Hypothetical protein. | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | 0.727 |
Lcho_0785 | Lcho_0002 | Lcho_0785 | Lcho_0002 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.717 |
Lcho_0785 | Lcho_0784 | Lcho_0785 | Lcho_0784 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | Hypothetical protein. | 0.727 |
Lcho_0785 | Lcho_0864 | Lcho_0785 | Lcho_0864 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component. | 0.683 |
Lcho_0785 | Lcho_0865 | Lcho_0785 | Lcho_0865 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mpt:Mpe_A1680 type IV secretory pathway, VirB9 component. | 0.683 |
Lcho_0785 | Lcho_0866 | Lcho_0785 | Lcho_0866 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | PFAM: VirB8 family protein; KEGG: mpt:Mpe_A1681 type IV secretory pathway, VirB8 component. | 0.759 |
Lcho_0785 | Lcho_0867 | Lcho_0785 | Lcho_0867 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | PFAM: type IV secretion system family protein; KEGG: bxe:Bxe_C0452 putative type IV secretion system protein VirB5/TraF. | 0.683 |
Lcho_0785 | Lcho_0868 | Lcho_0785 | Lcho_0868 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bxe:Bxe_A2654 putative type IV secretion system protein VirB6/TraH. | 0.693 |
Lcho_0785 | Lcho_0870 | Lcho_0785 | Lcho_0870 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: bxe:Bxe_C0450 putative type IV secretion system protein VirB4/TraE. | 0.689 |
Lcho_0785 | recB | Lcho_0785 | Lcho_1777 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...] | 0.869 |
Lcho_0785 | recC | Lcho_0785 | Lcho_1776 | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] | 0.840 |
Lcho_0864 | Lcho_0785 | Lcho_0864 | Lcho_0785 | PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component. | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | 0.683 |
Lcho_0864 | Lcho_0865 | Lcho_0864 | Lcho_0865 | PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component. | PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mpt:Mpe_A1680 type IV secretory pathway, VirB9 component. | 0.999 |
Lcho_0864 | Lcho_0866 | Lcho_0864 | Lcho_0866 | PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component. | PFAM: VirB8 family protein; KEGG: mpt:Mpe_A1681 type IV secretory pathway, VirB8 component. | 0.994 |
Lcho_0864 | Lcho_0867 | Lcho_0864 | Lcho_0867 | PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component. | PFAM: type IV secretion system family protein; KEGG: bxe:Bxe_C0452 putative type IV secretion system protein VirB5/TraF. | 0.863 |
Lcho_0864 | Lcho_0868 | Lcho_0864 | Lcho_0868 | PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component. | PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bxe:Bxe_A2654 putative type IV secretion system protein VirB6/TraH. | 0.971 |
Lcho_0864 | Lcho_0870 | Lcho_0864 | Lcho_0870 | PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component. | TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: bxe:Bxe_C0450 putative type IV secretion system protein VirB4/TraE. | 0.987 |
Lcho_0865 | Lcho_0785 | Lcho_0865 | Lcho_0785 | PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mpt:Mpe_A1680 type IV secretory pathway, VirB9 component. | KEGG: bxe:Bxe_C0462 putative DNA relaxase/nickase, TraS/VirD2-like. | 0.683 |
Lcho_0865 | Lcho_0864 | Lcho_0865 | Lcho_0864 | PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mpt:Mpe_A1680 type IV secretory pathway, VirB9 component. | PFAM: conjugation TrbI family protein; KEGG: mpt:Mpe_A1679 type IV secretory pathway, VirB10 component. | 0.999 |