STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0798PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0982 fumarylacetoacetate (FAA) hydrolase. (231 aa)    
Predicted Functional Partners:
Lcho_3672
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: dac:Daci_3700 maleylacetoacetate isomerase.
  
 
 0.919
Lcho_3671
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pna:Pnap_3146 fumarylacetoacetate (FAA) hydrolase.
  
  
 
0.905
Lcho_0432
Fumarylacetoacetase; KEGG: pna:Pnap_1118 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
     
  0.900
Lcho_0709
Fumarylacetoacetase; KEGG: dac:Daci_2036 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
     
  0.900
Lcho_2044
Fumarylacetoacetase; KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
     
  0.900
Lcho_3264
KEGG: mpt:Mpe_A3633 hypothetical protein.
     
  0.900
Lcho_4303
Fumarylacetoacetase; KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
     
  0.900
Lcho_2704
KEGG: mpt:Mpe_A2168 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
  0.817
Lcho_2703
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: mpt:Mpe_A2167 succinate dehydrogenase (ubiquinone).
  
 
  0.808
Lcho_2705
TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: mpt:Mpe_A2169 transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein.
   
 
  0.804
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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