STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0802Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: pol:Bpro_5567 putative transcriptional regulator, fis family. (427 aa)    
Predicted Functional Partners:
Lcho_0803
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pde:Pden_0181 glucose-methanol-choline oxidoreductase.
       0.505
Lcho_0801
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0979 transcriptional regulator, LysR family.
       0.495
Lcho_0804
PFAM: Aldehyde Dehydrogenase_; KEGG: pde:Pden_0180 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.475
Lcho_0411
KEGG: pol:Bpro_1459 dihydroxyacetone kinase, subunit L; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak kinase; Dak phosphatase.
  
 
 
 0.463
Lcho_0797
PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region.
 
     0.440
Lcho_3059
KEGG: ajs:Ajs_3873 hypothetical protein.
  
     0.434
Lcho_3424
PFAM: General secretion pathway L; KEGG: mpt:Mpe_A3133 general secretion pathway protein L.
  
     0.414
Lcho_0796
PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: aav:Aave_0166 aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
     0.409
Lcho_2907
KEGG: mms:mma_3357 type IV pilus assembly protein PilW.
  
     0.401
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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