STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0803PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pde:Pden_0181 glucose-methanol-choline oxidoreductase. (581 aa)    
Predicted Functional Partners:
Lcho_0188
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: mpt:Mpe_A3803 putative choline dehydrogenase lipoprotein oxidoreductase.
  
  
 
0.923
Lcho_3370
PFAM: Rieske [2Fe-2S] domain protein; KEGG: aav:Aave_2012 Rieske (2Fe-2S) domain protein.
    
 0.909
Lcho_3604
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.800
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.800
Lcho_1807
PFAM: WD-40 repeat protein; KEGG: amr:AM1_4989 WD-repeat protein.
  
 
 0.760
Lcho_0149
PFAM: Ankyrin; KEGG: pol:Bpro_4103 ankyrin.
    
 0.717
Lcho_0804
PFAM: Aldehyde Dehydrogenase_; KEGG: pde:Pden_0180 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.684
Lcho_0802
Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: pol:Bpro_5567 putative transcriptional regulator, fis family.
       0.505
Lcho_0020
KEGG: abo:ABO_0894 hypothetical protein.
    
 0.475
Lcho_0486
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mca:MCA1511 TPR domain protein.
    
 0.475
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.