STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0804PFAM: Aldehyde Dehydrogenase_; KEGG: pde:Pden_0180 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (483 aa)    
Predicted Functional Partners:
Lcho_0803
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pde:Pden_0181 glucose-methanol-choline oxidoreductase.
  
  
 0.684
Lcho_0236
Histidine kinase; PFAM: Na+/solute symporter; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_3779 periplasmic sensor signal transduction histidine kinase.
  
 
 0.478
Lcho_0802
Transcriptional regulator, Fis family; PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: pol:Bpro_5567 putative transcriptional regulator, fis family.
   
 
 0.475
Lcho_3317
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bam:Bamb_1300 myo-inositol catabolism IolB domain protein.
  
  
 0.439
Lcho_2701
KEGG: mpt:Mpe_A2165 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.437
Lcho_0418
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: pna:Pnap_1560 4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.427
Lcho_3315
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bur:Bcep18194_A4566 acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.424
Lcho_3656
PFAM: Aldehyde Dehydrogenase_; KEGG: pna:Pnap_2947 aldehyde dehydrogenase.
  
     0.416
Lcho_1628
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
 
 
0.415
Lcho_0879
KEGG: bxe:Bxe_A2669 hypothetical protein.
  
  
 0.408
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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