STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0806PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_0659 putative major facilitator superfamily (MFS) transporter. (419 aa)    
Predicted Functional Partners:
Lcho_0807
PFAM: glycoside hydrolase family 3 domain protein; KEGG: rle:RL4489 putative glycosyl hydrolase.
     
 0.789
Lcho_0808
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1901 TonB-dependent receptor.
       0.572
Lcho_0805
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mmr:Mmar10_0276 transcriptional regulator, LacI family.
     
 0.554
Lcho_0463
PFAM: protein of unknown function DUF1365; KEGG: mpt:Mpe_A0235 hypothetical protein.
  
  
 0.451
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.