STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0819KEGG: pde:Pden_0194 hypothetical protein. (292 aa)    
Predicted Functional Partners:
Lcho_2415
KEGG: reh:H16_A2424 hypothetical protein.
  
  
 
0.921
Lcho_0818
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pde:Pden_0195 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
  
 0.794
Lcho_2417
PFAM: HpcH/HpaI aldolase; KEGG: pna:Pnap_3810 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.630
Lcho_0820
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pde:Pden_0191 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.602
Lcho_0817
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pde:Pden_0192 short-chain dehydrogenase/reductase SDR.
       0.510
Lcho_2709
KEGG: mpt:Mpe_A2173 putative lyase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.470
Lcho_0821
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: reu:Reut_B5224 TRAP dicarboxylate transporter-DctP subunit.
  
    0.456
Lcho_1240
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_3393 acyl-CoA dehydrogenase domain protein.
 
    0.435
Lcho_0822
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vei:Veis_4815 TRAP C4-dicarboxylate transport system permease DctM subunit.
  
  
 0.419
Lcho_0716
KEGG: acr:Acry_2893 hypothetical protein.
  
     0.402
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.