STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0825PFAM: Cupin 2 conserved barrel domain protein; KEGG: rha:RHA1_ro00659 possible WhiE protein. (136 aa)    
Predicted Functional Partners:
Lcho_0826
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pna:Pnap_2814 antibiotic biosynthesis monooxygenase.
       0.683
Lcho_0827
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: har:HEAR2599 hypothetical protein.
       0.669
Lcho_0824
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pde:Pden_0196 short-chain dehydrogenase/reductase SDR.
       0.636
Lcho_0823
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: mxa:MXAN_5469 male sterility protein-like protein.
  
    0.621
Lcho_0822
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vei:Veis_4815 TRAP C4-dicarboxylate transport system permease DctM subunit.
       0.561
Lcho_0887
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sme:SMc02340 putative transcription regulator protein.
 
    0.491
Lcho_0821
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: reu:Reut_B5224 TRAP dicarboxylate transporter-DctP subunit.
       0.486
Lcho_0820
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pde:Pden_0191 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.432
Lcho_2707
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mpt:Mpe_A2171 putative transcription regulator protein.
  
    0.407
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.