STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0836PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: bam:Bamb_3334 stress responsive alpha-beta barrel domain protein. (102 aa)    
Predicted Functional Partners:
Lcho_0837
PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase.
       0.805
Lcho_0886
PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ace:Acel_0721 fructose-bisphosphate aldolase.
  
  
 0.584
Lcho_0838
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rha:RHA1_ro02994 possible oxidoreductase.
       0.577
Lcho_0839
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_3326 xylose isomerase domain protein TIM barrel.
       0.574
Lcho_4069
PAS/PAC sensor hybrid histidine kinase; KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
   
 0.542
Lcho_0840
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase domain; KEGG: acr:Acry_2329 inositol 2-dehydrogenase.
       0.533
Lcho_0834
PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bur:Bcep18194_A4486 intradiol ring-cleavage dioxygenase.
 
     0.466
Lcho_0835
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A4487 transcriptional regulator, LysR family.
       0.453
Lcho_0841
KEGG: rha:RHA1_ro00226 ABC sugar transporter, periplasmic solute-binding protein.
  
  
 0.442
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
    0.426
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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