STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0839PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_3326 xylose isomerase domain protein TIM barrel. (292 aa)    
Predicted Functional Partners:
Lcho_0838
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rha:RHA1_ro02994 possible oxidoreductase.
 
  
 0.875
Lcho_0840
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase domain; KEGG: acr:Acry_2329 inositol 2-dehydrogenase.
  
  
 0.814
Lcho_3692
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pna:Pnap_1656 xylose isomerase domain protein TIM barrel.
  
     0.772
Lcho_2427
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_2701 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
     0.688
Lcho_1201
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: pna:Pnap_2710 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
     0.673
Lcho_0837
PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase.
 
    0.649
Lcho_0995
PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0275 amidohydrolase 2.
 
     0.641
Lcho_0413
PFAM: regulatory protein TetR; KEGG: pol:Bpro_4502 transcriptional regulator, TetR family.
  
     0.636
Lcho_3683
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: pna:Pnap_2707 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
     0.630
Lcho_3314
PFAM: PfkB domain protein; KEGG: bmu:Bmul_1892 PfkB domain protein.
  
  
 0.578
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.