STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0846PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bmu:Bmul_1907 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (415 aa)    
Predicted Functional Partners:
Lcho_0847
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_5908 acyl-CoA dehydrogenase-like protein.
 
 
  0.789
Lcho_0845
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pna:Pnap_2135 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.730
Lcho_0848
PFAM: cytochrome c class I; KEGG: gtn:GTNG_2417 membrane-attached cytochrome c550.
       0.686
Lcho_0849
PFAM: Pyrrolo-quinoline quinone; KEGG: bbt:BBta_2326 putative quinoprotein.
       0.686
Lcho_0850
KEGG: mpt:Mpe_A1596 hypothetical protein.
       0.646
Lcho_0851
PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A1595 putative alcohol dehydrogenase.
       0.646
Lcho_0844
KEGG: rfr:Rfer_0226 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.541
Lcho_0852
PFAM: luciferase family protein; KEGG: pde:Pden_0203 luciferase family protein.
       0.440
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.