STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0874KEGG: bxe:Bxe_A1752 hypothetical protein. (186 aa)    
Predicted Functional Partners:
Lcho_0873
PFAM: Lytic transglycosylase catalytic; KEGG: bmu:Bmul_3753 lytic transglycosylase catalytic.
       0.763
Lcho_0872
PFAM: Conjugal transfer protein TrbC; KEGG: bcs:BCAN_B0071 TraC protein.
       0.703
Lcho_0870
TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: bxe:Bxe_C0450 putative type IV secretion system protein VirB4/TraE.
     
 0.679
Lcho_0871
PFAM: type IV secretory pathway VirB3 family protein; KEGG: bch:Bcen2424_3314 type IV secretory pathway, VirB3 family protein.
       0.658
Lcho_0869
Hypothetical protein.
       0.657
Lcho_0868
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bxe:Bxe_A2654 putative type IV secretion system protein VirB6/TraH.
       0.654
Lcho_0198
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: mpt:Mpe_A3780 putative chromosome partitioning protein ParB; Belongs to the ParB family.
  
 
 0.638
Lcho_0783
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KorB domain protein; KEGG: ajs:Ajs_4306 ParB-like partition proteins; Belongs to the ParB family.
  
 
 0.638
Lcho_0875
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: mpt:Mpe_A1685 hypothetical protein.
       0.508
Lcho_0862
PFAM: TRAG family protein; KEGG: bxe:Bxe_C0458 putative type IV secretory pathway protein VirD4.
     
 0.476
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.