STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0892PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: csa:Csal_2614 ABC transporter related. (357 aa)    
Predicted Functional Partners:
Lcho_0890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3853 binding-protein-dependent transport systems inner membrane component.
 
 0.991
Lcho_0891
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3852 binding-protein-dependent transport systems inner membrane component.
 
 0.991
Lcho_3327
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_0023 binding-protein-dependent transport systems inner membrane component.
 0.979
Lcho_3328
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_0259 binding-protein-dependent transport systems inner membrane component.
 
 0.977
Lcho_0137
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3170 binding-protein-dependent transport systems inner membrane component.
 
 0.963
Lcho_0136
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3169 binding-protein-dependent transport systems inner membrane component.
 
 0.962
Lcho_0889
PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4845 extracellular solute-binding protein, family 1.
  
 0.945
Lcho_3329
PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_00201 ABC-type sugar transport system, periplasmic component.
 
 0.914
Lcho_3244
PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_A1185 maltose/maltodextrin import ATP-binding protein MalK.
  
  
 
0.905
Lcho_0135
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vei:Veis_3168 ABC transporter related.
  
  
 
0.903
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.