STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0895Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vei:Veis_3165 helix-turn-helix-domain containing protein, AraC type. (302 aa)    
Predicted Functional Partners:
Lcho_0894
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vei:Veis_3167 mannitol dehydrogenase, C-terminal domain.
 
   
 0.762
Lcho_0891
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3852 binding-protein-dependent transport systems inner membrane component.
 
   
 0.553
Lcho_0890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3853 binding-protein-dependent transport systems inner membrane component.
 
   
 0.552
Lcho_0893
PFAM: Dak kinase; Dak phosphatase; KEGG: ret:RHE_CH02988 dihydroxyacetone kinase protein.
       0.538
Lcho_0889
PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4845 extracellular solute-binding protein, family 1.
 
   
 0.486
Lcho_0892
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: csa:Csal_2614 ABC transporter related.
     
 0.477
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.414
Lcho_0134
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vei:Veis_3167 mannitol dehydrogenase, C-terminal domain.
 
   
 0.410
Lcho_4069
PAS/PAC sensor hybrid histidine kinase; KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.400
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.