STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0905KEGG: mpt:Mpe_A3028 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Lcho_1518
KEGG: mpt:Mpe_A1421 putative transmembrane protein.
  
     0.722
Lcho_3940
TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: mpt:Mpe_A0173 putative glutamate--cysteine ligase.
  
     0.712
Lcho_1289
PFAM: Domain of unknown function DUF1841; KEGG: pol:Bpro_1226 hypothetical protein.
  
     0.701
Lcho_4308
TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: mpt:Mpe_A1506 hypothetical protein.
  
     0.656
Lcho_1992
TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: bmu:Bmul_1136 phasin family protein.
  
     0.631
Lcho_3370
PFAM: Rieske [2Fe-2S] domain protein; KEGG: aav:Aave_2012 Rieske (2Fe-2S) domain protein.
  
     0.595
Lcho_1302
KEGG: ajs:Ajs_0183 hypothetical protein.
  
     0.585
Lcho_0907
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
       0.557
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mpt:Mpe_A3029 acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
       0.556
Lcho_2705
TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: mpt:Mpe_A2169 transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein.
  
     0.546
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.