Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lcho_0919 | rplD | Lcho_0919 | Lcho_3998 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.871 |
| Lcho_0919 | rplM | Lcho_0919 | Lcho_3452 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.863 |
| Lcho_0919 | rplT | Lcho_0919 | Lcho_1748 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.867 |
| Lcho_0919 | rplU | Lcho_0919 | Lcho_3277 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.948 |
| Lcho_0919 | rpmA | Lcho_0919 | Lcho_3276 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | PFAM: ribosomal protein L27; KEGG: mpt:Mpe_A0512 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.911 |
| Lcho_0919 | rpmJ | Lcho_0919 | Lcho_3927 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | PFAM: ribosomal protein L36; KEGG: rfr:Rfer_4221 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.876 |
| Lcho_0919 | rpsG | Lcho_0919 | Lcho_3862 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.885 |
| Lcho_0919 | rpsL | Lcho_0919 | Lcho_3861 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.889 |
| Lcho_0919 | rpsN | Lcho_0919 | Lcho_3936 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.867 |
| Lcho_0919 | rpsP | Lcho_0919 | Lcho_0681 | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | PFAM: ribosomal protein S16; KEGG: mpt:Mpe_A1104 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.891 |
| rplD | Lcho_0919 | Lcho_3998 | Lcho_0919 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor. | 0.871 |
| rplD | rplM | Lcho_3998 | Lcho_3452 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
| rplD | rplT | Lcho_3998 | Lcho_1748 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.992 |
| rplD | rplU | Lcho_3998 | Lcho_3277 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.992 |
| rplD | rpmA | Lcho_3998 | Lcho_3276 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | PFAM: ribosomal protein L27; KEGG: mpt:Mpe_A0512 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.991 |
| rplD | rpmJ | Lcho_3998 | Lcho_3927 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | PFAM: ribosomal protein L36; KEGG: rfr:Rfer_4221 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.990 |
| rplD | rpsG | Lcho_3998 | Lcho_3862 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rplD | rpsL | Lcho_3998 | Lcho_3861 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
| rplD | rpsN | Lcho_3998 | Lcho_3936 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.998 |
| rplD | rpsP | Lcho_3998 | Lcho_0681 | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | PFAM: ribosomal protein S16; KEGG: mpt:Mpe_A1104 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.990 |
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