STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0948D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A3520 D-amino-acid dehydrogenase. (435 aa)    
Predicted Functional Partners:
Lcho_2852
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1981 D-amino-acid dehydrogenase.
  
  
 
0.925
Lcho_0418
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: pna:Pnap_1560 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.909
Lcho_0434
KEGG: pna:Pnap_1120 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.906
Lcho_2042
KEGG: ppu:PP_3433 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.906
Lcho_3691
KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.906
Lcho_2380
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_4507 D-amino-acid dehydrogenase.
  
  
 
0.905
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A0832 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.904
Lcho_4238
PFAM: aminotransferase class IV; KEGG: mpt:Mpe_A0312 putative class IV aminotransferase.
     
 0.904
Lcho_0924
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A3682 aromatic amino acid aminotransferase.
     
 0.902
Lcho_1051
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: pna:Pnap_1562 aspartate transaminase.
     
 0.902
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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