STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0954PFAM: integrase family protein; KEGG: pen:PSEEN1782 integrase; Belongs to the 'phage' integrase family. (388 aa)    
Predicted Functional Partners:
Lcho_0955
PFAM: transposase IS4 family protein; KEGG: eba:ebA3243 transposase, IS5 family.
       0.498
Lcho_3816
KEGG: mpt:Mpe_A3184 putative phosphoribosyl transferase.
   
    0.420
Lcho_0962
PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mpt:Mpe_A2242 prephenate dehydrogenase.
  
    0.411
Lcho_0897
PFAM: integrase family protein; KEGG: dar:Daro_2526 phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.406
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.