STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0969KEGG: tbd:Tbd_0736 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Lcho_0968
TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: dar:Daro_3928 lipopolysaccharide heptosyltransferase I.
  
  
 0.656
Lcho_1390
PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_0967 glycosyl transferase, family 2.
 
 
 0.631
Lcho_0970
KEGG: mca:MCA1515 hypothetical protein.
       0.629
Lcho_0971
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_3058 methyltransferase type 12.
       0.623
Lcho_2342
PFAM: glycosyl transferase family 2; KEGG: bra:BRADO4817 putative glycosyltransferase (family 2).
  
     0.516
Lcho_2319
Undecaprenyl-phosphate glucose phosphotransferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.514
Lcho_2715
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative.
  
  
 0.514
Lcho_1169
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fre:Franean1_6766 endonuclease/exonuclease/phosphatase.
  
     0.464
Lcho_0972
KEGG: ret:RHE_CH02994 hypothetical protein.
  
  
 0.450
Lcho_3624
KEGG: azo:azo2314 glycosyltransferase.
  
  
 0.405
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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