STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1007KEGG: cph:Cpha266_1838 hypothetical protein. (500 aa)    
Predicted Functional Partners:
Lcho_0298
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0605 hypothetical protein.
 
     0.758
Lcho_0751
KEGG: mpt:Mpe_A1948 hypothetical protein.
  
     0.747
Lcho_0489
PFAM: O-antigen polymerase; KEGG: mpt:Mpe_A0063 O-antigen polymerase.
 
     0.743
Lcho_2013
KEGG: mpt:Mpe_A1550 hypothetical protein.
  
     0.737
Lcho_0654
Hypothetical protein.
  
     0.729
Lcho_0655
KEGG: lma:LmjF35.0290 hypothetical protein, conserved.
  
     0.724
Lcho_1762
KEGG: bam:Bamb_3147 outer membrane efflux protein.
  
     0.722
Lcho_4368
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: tbd:Tbd_1077 predicted transcriptional regulator.
  
     0.711
Lcho_0265
KEGG: mpt:Mpe_A0595 hypothetical protein.
  
     0.707
Lcho_1797
KEGG: mpt:Mpe_A2591 hypothetical protein.
  
     0.706
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.