STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1018PFAM: flagellar assembly protein FliH; KEGG: mpt:Mpe_A0567 flagellar biosynthesis protein. (261 aa)    
Predicted Functional Partners:
Lcho_1019
KEGG: mpt:Mpe_A0568 flagellar biosynthesis ATPase; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase.
 
 
 0.998
Lcho_1017
PFAM: flagellar motor switch protein FliG; KEGG: mpt:Mpe_A0566 flagellar motor switch protein.
 
 
 0.995
Lcho_1024
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: mpt:Mpe_A0573 flagellar motor switch protein.
 
 
 0.993
Lcho_1016
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.991
Lcho_2726
KEGG: mpt:Mpe_A3065 flagellum-specific muramidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2.
 
  
 0.989
Lcho_1022
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.987
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: mpt:Mpe_A0564 flagellar hook-basal body protein.
 
  
 0.985
Lcho_1023
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: mpt:Mpe_A0572 flagellar motor switch protein.
 
 
 0.985
Lcho_1021
PFAM: flagellar hook-length control protein; KEGG: mpt:Mpe_A0570 flagellar hook-length control protein.
 
  
 0.984
Lcho_2725
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: mpt:Mpe_A3064 flagellar hook-associated protein.
 
  
 0.978
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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