Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lcho_1069PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: pna:Pnap_1281 major facilitator superfamily MFS_1. (421 aa)    
Predicted Functional Partners:
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
     
 0.711
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
     
 0.709
Lcho_1068
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: azo:azo3212 ParA family protein.
       0.524
Lcho_1072
PFAM: protein of unknown function DUF477; KEGG: aav:Aave_0379 protein of unknown function DUF477.
       0.457
Lcho_1073
PFAM: protein of unknown function DUF477; KEGG: pna:Pnap_0258 protein of unknown function DUF477.
       0.457
Lcho_1074
PFAM: LemA family protein; KEGG: mpt:Mpe_A0145 LemA protein.
       0.446
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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