STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1111Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: aav:Aave_2596 gluconolactonase. (324 aa)    
Predicted Functional Partners:
Lcho_0714
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain protein.
  
  
 
0.927
Lcho_0327
TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: pna:Pnap_0046 carbohydrate kinase, thermoresistant glucokinase family.
    
 0.911
Lcho_1989
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pna:Pnap_1622 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.911
Lcho_1112
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppf:Pput_1201 TRAP dicarboxylate transporter, DctM subunit.
       0.773
Lcho_1113
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ppf:Pput_1202 tripartite ATP-independent periplasmic transporter, DctQ component.
       0.773
Lcho_2456
KEGG: aav:Aave_0753 hypothetical protein.
 
   
 0.719
Lcho_1117
TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_3419 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
     0.627
Lcho_1115
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: vei:Veis_1238 NAD-dependent epimerase/dehydratase.
 
   
 0.605
Lcho_1114
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pmy:Pmen_3301 TRAP dicarboxylate transporter, DctP subunit.
       0.553
Lcho_2457
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: aav:Aave_0754 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
   
 0.514
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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