STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1118KEGG: pol:Bpro_3421 glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein. (444 aa)    
Predicted Functional Partners:
Lcho_1117
TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_3419 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.985
Lcho_2484
KEGG: pol:Bpro_3104 galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
 
 0.982
Lcho_0565
PFAM: Aldehyde Dehydrogenase_; KEGG: rsh:Rsph17029_2952 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.905
Lcho_0928
PFAM: Aldehyde Dehydrogenase_; KEGG: sil:SPO0097 aldehyde dehydrogenase family protein.
     
 0.905
Lcho_1122
PFAM: HpcH/HpaI aldolase; KEGG: mpt:Mpe_A0974 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.856
Lcho_1119
PFAM: Aldehyde Dehydrogenase_; KEGG: pol:Bpro_3422 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.664
Lcho_1116
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A0971 regulatory protein, GntR.
 
   
 0.652
Lcho_1121
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rme:Rmet_5274 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
   
 0.636
Lcho_1123
KEGG: pol:Bpro_3102 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding.
 
  
 0.622
Lcho_1120
PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A0972 hypothetical protein.
       0.573
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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