STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDTyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (286 aa)    
Predicted Functional Partners:
Lcho_0770
PFAM: integrase family protein; KEGG: eba:ebA499 phage-related integrase; Belongs to the 'phage' integrase family.
  
     0.747
Lcho_0777
PFAM: integrase family protein; KEGG: eba:ebA499 phage-related integrase.
  
     0.629
Lcho_0769
PFAM: integrase family protein; KEGG: eba:ebA497 phage-related integrase.
  
     0.586
Lcho_1145
PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A2023 hypothetical protein.
       0.563
Lcho_0756
PFAM: cell divisionFtsK/SpoIIIE; KEGG: mpt:Mpe_A1120 putative cell division FtsK transmembrane protein.
  
   
 0.514
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.460
Lcho_4199
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase.
 
   
 0.447
Lcho_0783
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KorB domain protein; KEGG: ajs:Ajs_4306 ParB-like partition proteins; Belongs to the ParB family.
  
  
 0.437
Lcho_0198
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: mpt:Mpe_A3780 putative chromosome partitioning protein ParB; Belongs to the ParB family.
  
  
 0.425
Lcho_3816
KEGG: mpt:Mpe_A3184 putative phosphoribosyl transferase.
   
    0.420
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.