STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1169PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fre:Franean1_6766 endonuclease/exonuclease/phosphatase. (343 aa)    
Predicted Functional Partners:
Lcho_1168
KEGG: aav:Aave_1320 hypothetical protein.
       0.551
Lcho_1172
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mpt:Mpe_A3640 glycolate oxidase iron-sulfur subunit.
 
     0.538
Lcho_1170
PFAM: FAD linked oxidase domain protein; biotin/lipoate A/B protein ligase; KEGG: mpt:Mpe_A3638 putative glycolate oxidase (FAD-linked subunit) oxidoreductase protein.
       0.498
Lcho_1171
PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3639 FAD linked oxidase.
       0.498
Lcho_1167
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: mpt:Mpe_A2020 hypothetical protein.
     
 0.489
Lcho_0969
KEGG: tbd:Tbd_0736 hypothetical protein.
  
     0.464
Lcho_0201
PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein.
   
    0.459
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.