STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1189PFAM: conserved hypothetical protein; KEGG: pna:Pnap_2127 uncharacterized protein UPF0065. (330 aa)    
Predicted Functional Partners:
Lcho_2304
PFAM: protein of unknown function DUF112 transmembrane; KEGG: mpt:Mpe_A3056 putative transmembrane protein.
 
  
 0.860
Lcho_2567
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_3009 protein of unknown function DUF112, transmembrane.
 
  
 0.860
Lcho_2305
PFAM: protein of unknown function DUF1468; KEGG: mpt:Mpe_A3057 hypothetical protein.
 
  
 0.774
Lcho_1188
TIGRFAM: cyclohexanecarboxylate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pna:Pnap_2126 AMP-dependent synthetase and ligase.
 
     0.702
Lcho_1190
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pna:Pnap_2128 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.642
Lcho_1187
TIGRFAM: cyclohexanecarboxyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pna:Pnap_2125 acyl-CoA dehydrogenase domain protein.
       0.560
Lcho_1191
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pna:Pnap_2129 acyl-CoA dehydrogenase.
       0.527
menB
2-ketocyclohexanecarboxyl-CoA hydrolase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
       0.521
Lcho_1192
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
       0.498
Lcho_2568
KEGG: pna:Pnap_1235 hypothetical protein.
 
  
 0.479
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.