STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1203PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2712 short-chain dehydrogenase/reductase SDR. (265 aa)    
Predicted Functional Partners:
Lcho_1200
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2709 short-chain dehydrogenase/reductase SDR.
 
    
0.809
Lcho_1201
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: pna:Pnap_2710 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
   
 0.804
Lcho_1202
PFAM: NIPSNAP family containing protein; KEGG: pna:Pnap_2711 NIPSNAP family containing protein.
 
     0.802
Lcho_1204
PFAM: inner-membrane translocator; KEGG: pna:Pnap_2713 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.642
Lcho_1206
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2715 ABC transporter related.
 
     0.626
Lcho_1205
PFAM: inner-membrane translocator; KEGG: pna:Pnap_2714 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.588
Lcho_1207
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2716 ABC transporter related.
       0.555
Lcho_1199
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pna:Pnap_2708 transcriptional regulator, AraC family.
       0.528
Lcho_0607
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.520
Lcho_0073
PFAM: Acyl transferase; KEGG: dac:Daci_1762 (acyl-carrier protein) S-malonyltransferase.
 
 
 0.506
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.