STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1248Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: syd:Syncc9605_0708 deoxyribodipyrimidine photolyase. (493 aa)    
Predicted Functional Partners:
Lcho_1250
PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: mpt:Mpe_A2055 putative alpha-deoxyribodipyrimidine photolyase-related protein.
 
   
 0.931
Lcho_1249
Deoxyribodipyrimidine photolyase-like protein; KEGG: syr:SynRCC307_2288 DNA photolyase FAD binding domain.
 
     0.924
Lcho_1251
KEGG: mpt:Mpe_A2054 hypothetical protein.
 
     0.894
Lcho_1247
KEGG: pna:Pnap_1322 hypothetical protein.
       0.615
Lcho_1246
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpt:Mpe_A2071 endonuclease/exonuclease/phosphatase family protein.
  
  
 0.531
Lcho_3758
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: bvi:Bcep1808_5897 putative transcriptional regulator, MerR family.
 
  
 0.523
Lcho_1253
PFAM: Rhodanese domain protein; KEGG: mpt:Mpe_A3482 rhodanese-related sulfurtransferase-like protein.
   
   0.498
Lcho_0466
KEGG: mpt:Mpe_A0232 sodium:galactoside symporter family protein.
 
    0.435
Lcho_1252
Methyltransferase type 11; PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pnu:Pnuc_0780 methyltransferase type 11.
       0.434
Lcho_0460
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: mpt:Mpe_A0238 hypothetical protein.
 
  
 0.423
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.