STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1255KEGG: hch:HCH_00812 deoxyinosine 3'endonuclease (endonuclease V). (167 aa)    
Predicted Functional Partners:
Lcho_4077
KEGG: mxa:MXAN_1306 hypothetical protein.
  
     0.609
Lcho_1254
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: aeh:Mlg_0631 cyclic nucleotide-binding protein.
       0.566
Lcho_1253
PFAM: Rhodanese domain protein; KEGG: mpt:Mpe_A3482 rhodanese-related sulfurtransferase-like protein.
       0.550
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
    0.535
Lcho_1893
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A3511 MoxR-like ATPase.
  
     0.478
Lcho_4380
PFAM: Rare lipoprotein A; KEGG: mxa:MXAN_3573 putative lipoprotein.
  
     0.476
Lcho_1107
PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: spe:Spro_3547 transcriptional regulator, AraC family.
  
   
 0.459
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
  
 0.434
Lcho_4079
KEGG: hch:HCH_07060 hypothetical protein.
  
     0.433
Lcho_1859
PFAM: Di-haem cytochrome c peroxidase; KEGG: dac:Daci_2892 cytochrome-c peroxidase.
  
     0.414
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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